Nowadays the stagnation of the Russian economy, largely manifesting itself in the weak susceptibility of the budget appropriations allocated for the development of the economy, in particular the development of industrial and innovative facilities, can be seen. It is impossible not to say that the state began to show a particularly intense interest and understanding of the importance of the development of these facilities for the national economy in recent years in connection with imposed sanctions against the Russian Federation (RF) and the decrease in the gross domestic product (GDP). But a “weak link”, that underlies for the basis of the decision of increasing the effectiveness of policies by state authorities, still remains. The most important institutional mechanisms remain without attention enabling of the transformation of relations between business, science and government according to requirements of innovative development and timely updating, namely the priority organizational and management over financial and economic methods. Organizational and managerial measures designed to simplify and facilitate the interaction of industrial enterprises with complicated external environment, or simplify the environment, or, finally, that most difficult to focus the movement of the environment to achieve the intended long-term goals of industrial development, which is the primary condition for subsequent budget allocations. Disclosure and understanding of the institutional nature of industrial and innovative development are fundamentally important for our country that seeks to enter the wave of economic recovery.